UNDERGRAD RESEARCH

Publications

A list of publications from previous students participating in the undergraduate research program. Student authors are denoted with an asterisk (*).

Note: In addition to the published papers and book chapters on this list, we have numerous other manuscripts in preparation.

Hainline A*, Alvarez C*, Luedtke A*, Greco B*, Beck A*, Tintle NL “Evaluation of the power and type I error of recently proposed family-based tests of association for rare variants” BMC Proceedings. 8(Suppl 2):S36.

Rogers A*, Beck A*, Tintle NL “Evaluating the concordance between sequencing, imputation and microarray genotype calls in the GAW18 data” BMC Proceedings. 8(Suppl 2):S20.

Greco B*, Luedtke A*, Hainline A*, Alvarez C*, Beck A* and Tintle NL “Application of family-based tests of association for rare variants to pathways” BMC Proceedings. 8(Suppl 2):S105.

Cook K*, Benitez A*, Fu C*, Tintle NL “Evaluating the impact of genotype errors on rare variant tests of association” Frontiers in Statistical Genetics and Methodology. April 2014. journal.frontiersin.org/Journal/10.3389/fgene.2014.00062/abstract

Petersen A*, Spratt J*, Tintle NL “Incorporating prior evidence into tests of genetic association” Chapter in Genome-Wide Association Studies. Ed. Cedric Gondro, Julius van der Werf and Ben Hayes. Springer, Methods in Molecular Biology series. 2013.

Liu K*, Fast S*, Zawistowski M, Tintle NL “A geometric framework for the evaluation of rare variant tests of association” Genetic Epidemiology. 37(4): 345-357.

Mayer-Jochimsen M*, Fast S*, Tintle NL “Assessing the impact of differential genotyping errors on rare variant tests of association”  PLoS One. March 5, 2013. http://www.plosone.org/article/info:doi/10.1371/journal.pone.0056626

Petersen A*, Alvarez C*, DeClaire S*, Tintle NL “Assessing methods for assigning SNPs to genes in gene-based tests of association using common variants. PLoS One. May 31, 2013. dx.plos.org/10.1371/journal.pone.0062161

Liu K*, Luedtke A*, Tintle NL “Optimal methods for using posterior probabilities in association testing” Human Heredity. 75(1):2-11.

Hainline A*, Alvarez C*, Luedtke A*, Greco B*, Beck A*, Tintle NL. "Evaluation of the power and type I error of recently proposed family-based tests of association for rare variants. BMC Proceedings. To appear.

Rogers A*, Beck A*, Tintle NL "Evaluating the concordance between sequencing, imputation and microarray genotype calls in GAW18 data." BMC Proceedings. To appear.

Greco B*, Luedtke A*, Hainline A*, Alvarez C*, Beck A* and Tintle NL "Application of family-based tests of association for rare variants to pathways. BMC Proceedings. To appear.

Powers S*, DeJongh M, Best AA, Tintle NL "Are computations of pairwise gene associations from expression data reliable?" BMC Bioinformatics. In revision. June 2013.

Tintle NL, Sitarik A*, Boerema B*, Young K*, Best AA, DeJongh M (2012) "Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data" BMC Bioinformatics. 13:193. www.biomedcentral.com/1471-2105/13/193

Bekmetjev A, VanBruggen D*, McLellan B*, DeWinkle B*, Lunderberg E*, Tintle NL (2012) "The cost-effectiveness of reclassification sampling for prevalence estimation" PLoS One. 7(2):e32058.

Powers S* and Tintle NL. (2011) "Assessing the impact of non-differential genotyping errors on rare variant tests of association" Human Heredity. 72(3):152-159.

Tintle NL, Bacon B*, Gutkovich Z, Bromet EJ. "Risk factors and correlates for depression in elderly Ukrainians" International Journal of Geriatric Psychiatry. Epub. January 2011.

Petersen A*, Sitarik A*, Luedtke A*, Powers S*, Bekmetjev A, Tintle NL "Evaluating methods for combining rare variant data in pathway-based tests of genetic association" BMC Proceedings, Volume 5, Supplement 9, 2011. In Press.

Luedtke A*, Powers S*, Petersen A*, Sitarik A*, Bekmetjev A, Tintle NL "Evaluating Methods for the Analysis of Rare Variants in Sequence Data." BMC Proceedings, Volume 5, Supplement 9, 2011. In Press.

Tintle, N.L., Gordon D., Van Bruggen D.*, Finch, S.J. (2009) "The cost effectiveness of duplicate genotyping for testing genetic association." Annals of Human Genetics. 73, 370-378.

Borchers, B.*, Brown, M.*, McLellan, B.*, Bekmetjev, A., Tintle, N.L. (2009) "Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness" Statistical Applications in Genetics and Molecular Biology. 8(1):24. www.bepress.com/sagmb/vol8/iss1/art24

Tintle, N.L., Best A.A., De Jongh M., Van Bruggen, D.*, Heffron F., Porwollik S., Taylor R.C. (2008) “Gene set analyses for interpreting microarray experiments on prokaryotic organisms.” BMC Bioinformatics. 9:469. www.biomedcentral.com/1471-2105/9/469